F_vs_K Plot on 'vsn-normalization.xls'

Plots are weird and totally wrong due to the mistake of extracting data. Forget these figures

top50 & reg (normalized):

Download: PDF

top50 & reg (not-normalized)

Download: PDF

1. Reshape XLS File ...
# of Item Entries: 4295
Extract Control & Shift Data ...Done!

2. Count Unique Gene/Regs in 'top50&reg.sif' (corrected by Juan)...
# of Unique Genes: 55
# of Unique Regulators: 29
# of Unique Genes & Regulators: 64

**Genes = right-hand column of 'top50& reg.sif'
**Regulators = left-hand column of 'top50& reg.sif'

3. Find Genes/Regulators shown in both .sif and .xls files ...
# of Item Entries in xls file: 4295
a) Common Genes ...
# of Unique Genes in 'top50&reg.sif': 55
# of Genes hit: 50
b) Common Regulators ...
# of Unique Regulators in 'top50®.sif': 29
# of Regulators hit: 23
c) Common Genes & Regulators ...
# of Unique Genes + Regs in 'top50®.sif': 64
# of Genes + Regs hit: 56

4. Generate inpn/yn data...Done.
5. Train VBSSM (10 seeds on cluster)
6. Plot F_K (see top) : normed vs. non-normed

(Local Data Folder: Fkk0215/non-normed & Fkk0216/normed)