ARD Scripts

Collected in http://www.cse.buffalo.edu/~juanli/ard_scripts/

It includes the scripts for ARD experiments.
part 1
run_single_121.m (1-arc prior, sample = 12, reps = 1)
run_single_124.m (1-arc prior, sample = 12, reps = 4)
run_single_128.m (1-arc prior, sample = 12, reps = 8)

run_pair_121 .m (2-arc prior, sample = 12, reps = 1)
run_pair_124 .m (2-arc prior, sample = 12, reps = 4)
run_pair_128 .m (2-arc prior, sample = 12, reps = 8)

run_triplet_121.m (3-arc prior, sample = 12, reps = 1)
run_triplet_124.m (3-arc prior, sample = 12, reps = 4)
run_triplet_128.m (3-arc prior, sample = 12, reps = 8)

part2
some auxilary scripts to calculate auc/roc quantity.
In addition, pair_map.mat gives the pair_index, and triplet_map gives the triplet_index, mapped from 12 single arcs.

part3
readme explains what the various fields in the network structure are

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Please can you put the matlab files which contain the model parameters for your ARD experiments on the web site also, together with a readme file which explains what the various fields in the network structure are?

VBSSM Release Issue

vbssm_v3.4.1, including the local/remote running script example is at
http://www.cse.buffalo.edu/~juanli/vbssm341.tgz

1. From David
Please could you check that the latest vbssm software, with prior incorporation is included in the release at

http://www.cse.buffalo.edu/faculty/mbeal/vbssm.html

Chis Miller should be able to help you.

What release version is this? -David
-- This release version is the original version 3.0 (08/11/03) Matt posted. (Juan)

2. From David

Have you worked on any of these yet?

In upcoming releases v3.4+

Provide sample scripts to demonstrate features new in release v3.4. -Yes
Allow missing (unobserved) entire time points in the data (smooth, predict, and feedback). -No
Allow for missing individual dimensions at some time points (sensor failure). -No. (Juan)

3. From David

We need the scripts for cluster usage and some example scripts to be included in the tar file
Please can you make sure this is done before 3/30?
-Yes. Download vbssmv3.4.1